HL_8BQX_017

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

8BQX|1|2|C|709, 8BQX|1|2|G|714, 8BQX|1|2|C|726, 8BQX|1|2|G|730, 8BQX|1|2|G|732, 8BQX|1|2|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3689

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

8BQX|1|2|G|703
8BQX|1|2|C|704
8BQX|1|2|U|705
8BQX|1|2|A|706
8BQX|1|2|A|707
8BQX|1|2|C|708
8BQX|1|2|C|709
8BQX|1|2|U|710
8BQX|1|2|U|711
8BQX|1|2|G|712
8BQX|1|2|A|713
8BQX|1|2|G|714
8BQX|1|2|C|726
8BQX|1|2|U|727
8BQX|1|2|U|728
8BQX|1|2|G|729
8BQX|1|2|G|730
8BQX|1|2|C|731
8BQX|1|2|G|732
8BQX|1|2|A|733
8BQX|1|2|A|734
8BQX|1|2|C|735

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A