HL_8BQX_019

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_019 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.3818

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8BQX|1|2|C|777
8BQX|1|2|G|778
8BQX|1|2|U|779
8BQX|1|2|A|780
8BQX|1|2|U|781
8BQX|1|2|U|782
8BQX|1|2|G|783

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain d

40S ribosomal protein S24-A