3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGUAUUG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BQX_019 not in the Motif Atlas
Homologous match to HL_8P9A_207
Geometric discrepancy: 0.3818
The information below is about HL_8P9A_207
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48417.6
Basepair signature
cWW-F-F
Number of instances in this motif group
22

Unit IDs

8BQX|1|2|C|777
8BQX|1|2|G|778
8BQX|1|2|U|779
8BQX|1|2|A|780
8BQX|1|2|U|781
8BQX|1|2|U|782
8BQX|1|2|G|783

Current chains

Chain 2
18S rRNA

Nearby chains

Chain S
40S ribosomal protein S4-A
Chain d
40S ribosomal protein S24-A

Coloring options:


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