HL_8BQX_032
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUCAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BQX_032 not in the Motif Atlas
- Homologous match to HL_4V88_217
- Geometric discrepancy: 0.4378
- The information below is about HL_4V88_217
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
8BQX|1|2|U|1396
8BQX|1|2|U|1397
8BQX|1|2|U|1398
8BQX|1|2|C|1399
8BQX|1|2|A|1400
8BQX|1|2|A|1401
8BQX|1|2|G|1402
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- 40S ribosomal protein S17-A
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