3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUUCAAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BQX_032 not in the Motif Atlas
Homologous match to HL_4V88_217
Geometric discrepancy: 0.4378
The information below is about HL_4V88_217
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_67216.9
Basepair signature
cWW-cWW-F-tSH
Number of instances in this motif group
9

Unit IDs

8BQX|1|2|U|1396
8BQX|1|2|U|1397
8BQX|1|2|U|1398
8BQX|1|2|C|1399
8BQX|1|2|A|1400
8BQX|1|2|A|1401
8BQX|1|2|G|1402

Current chains

Chain 2
18S rRNA

Nearby chains

Chain G
40S ribosomal protein S17-A

Coloring options:


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