HL_8BQX_047

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_047 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0921

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BQX|1|BQ|A|357
8BQX|1|BQ|G|358
8BQX|1|BQ|U|359
8BQX|1|BQ|G|360
8BQX|1|BQ|A|361
8BQX|1|BQ|U|362

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AL

60S ribosomal protein L39

Chain BE

60S ribosomal protein L4-A