HL_8BQX_071

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUUUUAUGC

Length

10 nucleotides

Bulged bases

8BQX|1|BQ|U|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQX|1|BQ|G|1565
8BQX|1|BQ|A|1566
8BQX|1|BQ|U|1567
8BQX|1|BQ|U|1568
8BQX|1|BQ|U|1569
8BQX|1|BQ|U|1570
8BQX|1|BQ|A|1571
8BQX|1|BQ|U|1572
8BQX|1|BQ|G|1573
8BQX|1|BQ|C|1574

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BS

5.8S ribosomal RNA; 5.8S rRNA