HL_8BQX_073

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_073 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.1074

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BQX|1|BQ|G|1634
8BQX|1|BQ|G|1635
8BQX|1|BQ|U|1636
8BQX|1|BQ|A|1637
8BQX|1|BQ|A|1638
8BQX|1|BQ|C|1639

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L27-A

Chain BN

60S ribosomal protein L34-A