HL_8BQX_092

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8BQX|1|BQ|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_092 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.134

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8BQX|1|BQ|C|2616
8BQX|1|BQ|U|2617
8BQX|1|BQ|G|2618
8BQX|1|BQ|G|2619
8BQX|1|BQ|G|2620
8BQX|1|BQ|G|2621
8BQX|1|BQ|C|2622
8BQX|1|BQ|G|2623
8BQX|1|BQ|G|2624

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BD

RPL10 isoform 1