HL_8BQX_095

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_095 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1092

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8BQX|1|BQ|C|2693
8BQX|1|BQ|A|2694
8BQX|1|BQ|A|2695
8BQX|1|BQ|A|2696
8BQX|1|BQ|A|2697
8BQX|1|BQ|G|2698
8BQX|1|BQ|G|2699
8BQX|1|BQ|G|2700

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain BD

RPL10 isoform 1

Chain BJ

60S ribosomal protein L21-A