HL_8BQX_105

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8BQX|1|BQ|G|3116, 8BQX|1|BQ|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BQX_105 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.105

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BQX|1|BQ|C|3110
8BQX|1|BQ|U|3111
8BQX|1|BQ|G|3112
8BQX|1|BQ|A|3113
8BQX|1|BQ|A|3114
8BQX|1|BQ|C|3115
8BQX|1|BQ|G|3116
8BQX|1|BQ|C|3117
8BQX|1|BQ|C|3118
8BQX|1|BQ|U|3119
8BQX|1|BQ|C|3120
8BQX|1|BQ|U|3121
8BQX|1|BQ|A|3122
8BQX|1|BQ|A|3123
8BQX|1|BQ|G|3124

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L40-A

Chain AU

60S ribosomal protein L16-A