HL_8BR8_002

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CAGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_002 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1087

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8BR8|1|LD|C|108
8BR8|1|LD|A|109
8BR8|1|LD|G|110
8BR8|1|LD|C|111
8BR8|1|LD|G|112

Current chains

Chain LD

5.8S rRNA

Nearby chains

Chain LG

Ribosomal protein L39

Chain LY

Ribosomal protein L23A

Chain Lk

Ribosomal protein L37

Chain Lt

Large subunit ribosomal RNA; LSU rRNA