8BR8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8BR8_106 | 1/LD/48:57 | Pseudoknot with intercalation | geometric HL_8VTW_001 NA | |
| HL_8BR8_001 | 1/LD/74:81 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_8BR8_002 | 1/LD/108:112 | No text annotation | geometric HL_2Y9H_003 HL_75660.8 | |
| HL_8BR8_003 | 1/LD/115:120 | No text annotation | geometric HL_5HR7_005 HL_50006.5 | |
| HL_8BR8_107 | 1/LE/32:46 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8BR8_004 | 1/LE/36:42 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_8BR8_005 | 1/LE/87:92 | GNRA | homologous HL_5TBW_186 NA | |
| HL_8BR8_006 | 1/Lt/37:44 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_8BR8_007 | 1/Lt/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8BR8_008 | 1/Lt/88:94 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8BR8_009 | 1/Lt/120:124 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8BR8_010 | 1/Lt/161:168 | T-loop related | geometric HL_3K0J_002 HL_67772.1 | |
| HL_8BR8_011 | 1/Lt/175:179 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_8BR8_012 | 1/Lt/183:191 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_8BR8_013 | 1/Lt/232:241 | T-loop related | homologous HL_8P9A_120 HL_63894.2 | |
| HL_8BR8_014 | 1/Lt/255:264 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_8BR8_015 | 1/Lt/309:314 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8BR8_016 | 1/Lt/334:339 | GNRA | homologous HL_5TBW_011 NA | |
| HL_8BR8_017 | 1/Lt/375:378 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_8BR8_018 | 1/Lt/388:397 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8BR8_019 | 1/Lt/434:439 | No text annotation | ||
| HL_8BR8_020 | 1/Lt/451:456 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8BR8_021 | 1/Lt/462:469 | No text annotation | geometric HL_4LFB_002 HL_46665.2 | |
| HL_8BR8_022 | 1/Lt/482:487 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_8BR8_023 | 1/Lt/561:566 | GNRA | homologous HL_5TBW_019 NA | |
| HL_8BR8_024 | 1/Lt/593:602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_8BR8_025 | 1/Lt/627:635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8BR8_026 | 1/Lt/675:680 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_8BR8_028 | 1/Lt/788:795 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_8BR8_029 | 1/Lt/836:842 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8BR8_030 | 1/Lt/858:865 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8BR8_032 | 1/Lt/1043:1048 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_8BR8_033 | 1/Lt/1091:1096 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8BR8_034 | 1/Lt/1149:1155 | Fab BL3-6 binding hairpin with tSW | geometric HL_8VMA_003 HL_64036.2 | |
| HL_8BR8_035 | 1/Lt/1189:1197 | No text annotation | geometric HL_7A0S_041 NA | |
| HL_8BR8_036 | 1/Lt/1228:1233 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8BR8_038 | 1/Lt/1272:1281 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8BR8_039 | 1/Lt/1301:1306 | GNRA | homologous HL_5TBW_036 NA | |
| HL_8BR8_040 | 1/Lt/1345:1355 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_8BR8_041 | 1/Lt/1384:1390 | No text annotation | geometric HL_1OOA_001 NA | |
| HL_8BR8_042 | 1/Lt/1435:1439 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8BR8_043 | 1/Lt/1476:1483 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_8BR8_044 | 1/Lt/1494:1500 | GNRA | homologous HL_8C3A_042 NA | |
| HL_8BR8_045 | 1/Lt/1555:1560 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8BR8_047 | 1/Lt/1599:1603 | No text annotation | geometric HL_4V9F_003 HL_75660.8 | |
| HL_8BR8_048 | 1/Lt/1624:1634 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_8BR8_049 | 1/Lt/1652:1659 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_8BR8_050 | 1/Lt/1708:1713 | GNRA | homologous HL_5TBW_048 NA | |
| HL_8BR8_051 | 1/Lt/1741:1751 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_8BR8_052 | 1/Lt/1780:1788 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8BR8_053 | 1/Lt/1857:1866 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8BR8_054 | 1/Lt/1953:1976 | No text annotation | ||
| HL_8BR8_055 | 1/Lt/2005:2012 | tRNA D-loop | geometric HL_3AKZ_010 HL_20490.1 | |
| HL_8BR8_056 | 1/Lt/2040:2048 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8BR8_057 | 1/Lt/2057:2069 | No text annotation | ||
| HL_8BR8_058 | 1/Lt/2097:2105 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8BR8_059 | 1/Lt/2117:2124 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_8BR8_060 | 1/Lt/2147:2157 | No text annotation | ||
| HL_8BR8_061 | 1/Lt/2168:2173 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8BR8_062 | 1/Lt/2199:2207 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8BR8_063 | 1/Lt/2263:2271 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_8BR8_064 | 1/Lt/2320:2327 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_8BR8_065 | 1/Lt/2343:2349 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_8BR8_066 | 1/Lt/2385:2390 | GNRA | homologous HL_5TBW_064 NA | |
| HL_8BR8_067 | 1/Lt/2443:2448 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8BR8_068 | 1/Lt/2485:2490 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8BR8_069 | 1/Lt/2526:2540 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8BR8_070 | 1/Lt/2572:2601 | No text annotation | ||
| HL_8BR8_071 | 1/Lt/2616:2624 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_8BR8_072 | 1/Lt/2654:2658 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_8BR8_073 | 1/Lu/13:21 | No text annotation | homologous HL_3KFU_004 NA | |
| HL_8BR8_074 | 1/Lu/52:60 | T-loop with 2 stacked bulged bases | homologous HL_1QTQ_003 HL_33597.3 | |
| HL_8BR8_075 | 1/St/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8BR8_076 | 1/St/61:73 | No text annotation | ||
| HL_8BR8_077 | 1/St/138:143 | GNRA | geometric HL_4QLM_001 HL_34789.4 | |
| HL_8BR8_078 | 1/St/182:188 | No text annotation | geometric HL_2Y9H_003 HL_75660.8 | |
| HL_8BR8_079 | 1/St/243:251 | GNRA related | homologous HL_4V88_193 NA | |
| HL_8BR8_080 | 1/St/281:286 | No text annotation | homologous HL_4V88_194 NA | |
| HL_8BR8_081 | 1/St/306:317 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8BR8_082 | 1/St/327:332 | UNCG | homologous HL_4V88_196 NA | |
| HL_8BR8_109 | 1/St/364:368 | No text annotation | ||
| HL_8BR8_084 | 1/St/391:394 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.3 | |
| HL_8BR8_085 | 1/St/405:415 | No text annotation | geometric HL_4V88_206 NA | |
| HL_8BR8_086 | 1/St/449:454 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_8BR8_087 | 1/St/543:551 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8BR8_088 | 1/St/591:602 | No text annotation | ||
| HL_8BR8_089 | 1/St/653:664 | No text annotation | ||
| HL_8BR8_090 | 1/St/691:696 | GNRA | homologous HL_4V88_207 NA | |
| HL_8BR8_091 | 1/St/751:761 | No text annotation | homologous HL_4V88_208 NA | |
| HL_8BR8_092 | 1/St/805:811 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_8BR8_093 | 1/St/827:832 | GNRA | homologous HL_4V88_210 NA | |
| HL_8BR8_094 | 1/St/865:870 | GNRA | homologous HL_4V88_211 NA | |
| HL_8BR8_095 | 1/St/932:941 | No text annotation | homologous HL_4V88_212 NA | |
| HL_8BR8_097 | 1/St/1038:1043 | GNRA | homologous HL_4V88_214 NA | |
| HL_8BR8_098 | 1/St/1051:1058 | No text annotation | homologous HL_4V88_215 NA | |
| HL_8BR8_099 | 1/St/1085:1089 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_8BR8_100 | 1/St/1104:1109 | GNRA | geometric HL_4V88_218 NA | |
| HL_8BR8_101 | 1/St/1199:1204 | GNRA | homologous HL_4V88_218 NA | |
| HL_8BR8_102 | 1/St/1241:1248 | T-loop with 2 stacked bulged bases | geometric HL_5DH6_002 HL_13999.3 | |
| HL_8BR8_103 | 1/St/1282:1290 | No text annotation | homologous HL_4V88_220 NA | |
| HL_8BR8_104 | 1/St/1366:1378 | No text annotation | ||
| HL_8BR8_105 | 1/St/1433:1438 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8BR8_027 | No text annotation | ||
| HL_8BR8_031 | No text annotation | ||
| HL_8BR8_037 | No text annotation | ||
| HL_8BR8_046 | No text annotation | ||
| HL_8BR8_108 | No text annotation | ||
| HL_8BR8_083 | No text annotation | ||
| HL_8BR8_096 | Anticodon loop related |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8BR8_001 | 1/LD/7:10, 1/Lt/364:366 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_8BR8_002 | 1/LD/14:20, 1/Lt/354:360 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_8BR8_003 | 1/LD/26:27, 1/Lt/288:290 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_8BR8_004 | 1/LD/32:34, 1/Lt/280:283 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_8BR8_005 | 1/LD/45:65, 1/LD/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8BR8_006 | 1/LD/70:74, 1/LD/81:91 | No text annotation | ||
| IL_8BR8_007 | 1/LD/134:136, 1/Lt/7:8 | No text annotation | geometric IL_9M86_004 IL_05642.3 | |
| IL_8BR8_008 | 1/LE/15:16, 1/LE/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_8BR8_009 | 1/LE/21:27, 1/LE/53:58 | No text annotation | geometric IL_9E6Q_106 IL_41504.1 | |
| IL_8BR8_192 | 1/LE/28:29, 1/LE/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_8BR8_011 | 1/LE/32:36, 1/LE/42:46 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_8BR8_012 | 1/LE/72:79, 1/LE/99:105 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_8BR8_013 | 1/LE/84:86, 1/LE/93:94 | Single bulged U | homologous IL_4V9F_107 IL_97561.5 | |
| IL_8BR8_014 | 1/Lt/26:27, 1/Lt/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8BR8_015 | 1/Lt/31:37, 1/Lt/44:51 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.3 | |
| IL_8BR8_016 | 1/Lt/81:87, 1/Lt/95:101 | No text annotation | ||
| IL_8BR8_017 | 1/Lt/116:120, 1/Lt/124:130 | No text annotation | ||
| IL_8BR8_018 | 1/Lt/328:332, 1/Lt/341:353 | No text annotation | geometric IL_4V9F_014 IL_31504.1 | |
| IL_8BR8_019 | 1/Lt/427:432, 1/Lt/441:445 | No text annotation | ||
| IL_8BR8_020 | 1/Lt/475:476, 1/Lt/493:495 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_8BR8_021 | 1/Lt/520:522, 1/Lt/655:657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8BR8_022 | 1/Lt/522:526, 1/Lt/648:655 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_8BR8_023 | 1/Lt/550:551, 1/Lt/576:578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8BR8_024 | 1/Lt/551:555, 1/Lt/572:576 | Triple sheared | geometric IL_5J7L_263 NA | |
| IL_8BR8_025 | 1/Lt/586:589, 1/Lt/605:607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8BR8_026 | 1/Lt/590:592, 1/Lt/603:604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8BR8_027 | 1/Lt/624:626, 1/Lt/636:640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8BR8_028 | 1/Lt/686:687, 1/Lt/821:823 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8BR8_029 | 1/Lt/694:696, 1/Lt/813:814 | No text annotation | ||
| IL_8BR8_030 | 1/Lt/698:700, 1/Lt/810:811 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8BR8_031 | 1/Lt/708:712, 1/Lt/765:769 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4V9F_033 IL_38862.5 | |
| IL_8BR8_032 | 1/Lt/712:713, 1/Lt/763:765 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_8BR8_033 | 1/Lt/714:718, 1/Lt/759:762 | C-loop | homologous IL_5TBW_040 NA | |
| IL_8BR8_034 | 1/Lt/720:723, 1/Lt/754:757 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_8BR8_193 | 1/Lt/728:732, 1/Lt/747:749 | No text annotation | homologous IL_8CRE_477 NA | |
| IL_8BR8_036 | 1/Lt/786:788, 1/Lt/795:796 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_8BR8_037 | 1/Lt/830:833, 1/Lt/845:848 | Tandem non-canonical cWW pairs | geometric IL_5EW4_001 IL_76776.2 | |
| IL_8BR8_038 | 1/Lt/877:881, 1/Lt/1028:1032 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8BR8_039 | 1/Lt/883:890, 1/Lt/1025:1026 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8BR8_040 | 1/Lt/896:905, 1/Lt/999:1019 | No text annotation | ||
| IL_8BR8_041 | 1/Lt/907:909, 1/Lt/996:997 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_8BR8_042 | 1/Lt/1063:1065, 1/Lt/1116:1119 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_8BR8_043 | 1/Lt/1072:1076, 1/Lt/1108:1109 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8BR8_044 | 1/Lt/1077:1084, 1/Lt/1103:1107 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_8BR8_045 | 1/Lt/1088:1090, 1/Lt/1097:1099 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_8BR8_046 | 1/Lt/1132:1138, 1/Lt/1842:1847 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_8BR8_047 | 1/Lt/1176:1179, 1/Lt/1470:1471 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.2 | |
| IL_8BR8_048 | 1/Lt/1185:1189, 1/Lt/1197:1199 | C-loop | geometric IL_4V9F_051 IL_63596.12 | |
| IL_8BR8_049 | 1/Lt/1216:1220, 1/Lt/1258:1263 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8BR8_050 | 1/Lt/1220:1221, 1/Lt/1256:1258 | Single bulged U | geometric IL_3WBM_001 IL_97561.5 | |
| IL_8BR8_051 | 1/Lt/1237:1242, 1/Lt/1251:1253 | No text annotation | ||
| IL_8BR8_052 | 1/Lt/1326:1329, 1/Lt/1429:1432 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_8BR8_053 | 1/Lt/1335:1336, 1/Lt/1421:1423 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8BR8_054 | 1/Lt/1369:1373, 1/Lt/1403:1407 | No text annotation | geometric IL_6JXM_002 IL_14445.1 | |
| IL_8BR8_055 | 1/Lt/1378:1383, 1/Lt/1391:1398 | Kink-turn | geometric IL_3U4M_004 IL_90775.2 | |
| IL_8BR8_056 | 1/Lt/1515:1520, 1/Lt/1835:1837 | No text annotation | geometric IL_5J7L_304 NA | |
| IL_8BR8_057 | 1/Lt/1527:1529, 1/Lt/1826:1828 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8BR8_058 | 1/Lt/1530:1533, 1/Lt/1824:1825 | Major groove platform; stack outside cWW | homologous IL_5TBW_076 NA | |
| IL_8BR8_181 | 1/Lt/1530:1538, 1/Lt/1821:1825 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_8BR8_059 | 1/Lt/1533:1538, 1/Lt/1821:1824 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_8BR8_060 | 1/Lt/1550:1555, 1/Lt/1560:1566 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_8BR8_061 | 1/Lt/1572:1574, 1/Lt/1595:1597 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8BR8_062 | 1/Lt/1579:1580, 1/Lt/1587:1590 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_8BR8_063 | 1/Lt/1617:1618, 1/Lt/1811:1813 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8BR8_064 | 1/Lt/1645:1650, 1/Lt/1661:1668 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8BR8_065 | 1/Lt/1684:1687, 1/Lt/1733:1734 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_8BR8_066 | 1/Lt/1688:1689, 1/Lt/1729:1732 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_8BR8_067 | 1/Lt/1692:1694, 1/Lt/1725:1726 | Single bulged C | geometric IL_1S03_006 IL_05642.3 | |
| IL_8BR8_068 | 1/Lt/1694:1698, 1/Lt/1723:1725 | 8-nt loop receptor | geometric IL_5T83_002 IL_83497.1 | |
| IL_8BR8_069 | 1/Lt/1699:1704, 1/Lt/1717:1722 | No text annotation | geometric IL_4QLM_002 IL_74322.2 | |
| IL_8BR8_070 | 1/Lt/1706:1708, 1/Lt/1713:1715 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_8BR8_071 | 1/Lt/1764:1765, 1/Lt/1795:1798 | Bulged stacked bases | geometric IL_4V9F_070 IL_24886.2 | |
| IL_8BR8_072 | 1/Lt/1765:1776, 1/Lt/1792:1795 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_8BR8_073 | 1/Lt/1879:1882, 1/Lt/2408:2410 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_8BR8_074 | 1/Lt/1884:1886, 1/Lt/2403:2406 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8BR8_075 | 1/Lt/1896:1899, 1/Lt/2234:2236 | Isolated non-canonical cWW pair | geometric IL_4ZC7_001 IL_01003.4 | |
| IL_8BR8_076 | 1/Lt/1900:1901, 1/Lt/2230:2233 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_8BR8_077 | 1/Lt/1911:1913, 1/Lt/2028:2031 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_8BR8_078 | 1/Lt/1931:1932, 1/Lt/1988:1990 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_8BR8_079 | 1/Lt/1939:1950, 1/Lt/1979:1981 | No text annotation | ||
| IL_8BR8_080 | 1/Lt/2038:2039, 1/Lt/2049:2051 | No text annotation | ||
| IL_8BR8_081 | 1/Lt/2090:2092, 1/Lt/2110:2114 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_8BR8_082 | 1/Lt/2092:2094, 1/Lt/2108:2110 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_8BR8_083 | 1/Lt/2193:2195, 1/Lt/2211:2212 | Single stack bend | geometric IL_7A0S_054 IL_15011.3 | |
| IL_8BR8_084 | 1/Lt/2246:2247, 1/Lt/2288:2290 | Major groove platform | geometric IL_4V9F_082 IL_48076.8 | |
| IL_8BR8_182 | 1/Lt/2246:2251, 1/Lt/2285:2290 | No text annotation | ||
| IL_8BR8_085 | 1/Lt/2247:2251, 1/Lt/2285:2288 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8BR8_086 | 1/Lt/2251:2253, 1/Lt/2281:2285 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_8BR8_087 | 1/Lt/2258:2262, 1/Lt/2272:2276 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8BR8_088 | 1/Lt/2299:2300, 1/Lt/2371:2373 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_8BR8_089 | 1/Lt/2302:2304, 1/Lt/2365:2369 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8BR8_090 | 1/Lt/2304:2305, 1/Lt/2362:2365 | Multiple bulged bases | geometric IL_4V9F_088 IL_44609.2 | |
| IL_8BR8_091 | 1/Lt/2314:2315, 1/Lt/2332:2335 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_8BR8_092 | 1/Lt/2341:2343, 1/Lt/2349:2351 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_8BR8_093 | 1/Lt/2382:2383, 1/Lt/2392:2394 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_8BR8_094 | 1/Lt/2422:2425, 1/Lt/2555:2558 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_8BR8_095 | 1/Lt/2437:2443, 1/Lt/2448:2453 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_4V9F_092 IL_02666.1 | |
| IL_8BR8_096 | 1/Lt/2465:2469, 1/Lt/2508:2510 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_8BR8_097 | 1/Lt/2469:2471, 1/Lt/2506:2508 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_01003.4 | |
| IL_8BR8_098 | 1/Lt/2472:2476, 1/Lt/2501:2505 | UAA/GAN related, with intercalation | geometric IL_5J7L_348 NA | |
| IL_8BR8_099 | 1/Lt/2480:2481, 1/Lt/2494:2497 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_8BR8_100 | 1/Lt/2518:2523, 1/Lt/2543:2548 | UAA/GAN with extra cWW | geometric IL_7RQB_107 NA | |
| IL_8BR8_101 | 1/Lt/2563:2567, 1/Lt/2606:2609 | No text annotation | ||
| IL_8BR8_102 | 1/Lt/2631:2632, 1/Lt/2679:2681 | Minor groove platform related | geometric IL_3K0J_002 IL_34520.3 | |
| IL_8BR8_103 | 1/Lt/2636:2637, 1/Lt/2673:2675 | No text annotation | ||
| IL_8BR8_104 | 1/Lt/2640:2645, 1/Lt/2666:2670 | tHS double platform | geometric IL_4V9F_099 IL_48489.1 | |
| IL_8BR8_105 | 1/Lt/2648:2650, 1/Lt/2662:2663 | No text annotation | ||
| IL_8BR8_106 | 1/Lt/2650:2653, 1/Lt/2659:2662 | Double sheared | geometric IL_4V9F_100 IL_58355.2 | |
| IL_8BR8_107 | 1/St/37:40, 1/St/379:383 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_8BR8_108 | 1/St/41:47, 1/St/344:346 | No text annotation | homologous IL_8C3A_395 NA | |
| IL_8BR8_109 | 1/St/49:51, 1/St/341:342 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_8BR8_110 | 1/St/58:60, 1/St/74:75 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_8BR8_111 | 1/St/96:99, 1/St/217:220 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_8BR8_112 | 1/St/100:103, 1/St/215:216 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_8BR8_113 | 1/St/104:108, 1/St/211:214 | Minor groove platform related | geometric IL_5J7L_010 NA | |
| IL_8BR8_183 | 1/St/111:122, 1/St/203:208 | No text annotation | ||
| IL_8BR8_114 | 1/St/127:133, 1/St/148:155 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_8BR8_115 | 1/St/160:165, 1/St/197:201 | No text annotation | ||
| IL_8BR8_184 | 1/St/160:169, 1/St/194:201 | No text annotation | ||
| IL_8BR8_116 | 1/St/165:169, 1/St/194:197 | No text annotation | ||
| IL_8BR8_117 | 1/St/172:182, 1/St/188:191 | No text annotation | ||
| IL_8BR8_118 | 1/St/226:231, 1/St/261:268 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_8BR8_119 | 1/St/233:236, 1/St/258:259 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_8BR8_120 | 1/St/276:278, 1/St/289:294 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8BR8_121 | 1/St/324:326, 1/St/333:335 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_8BR8_122 | 1/St/352:354, 1/St/376:377 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_8BR8_123 | 1/St/356:360, 1/St/373:374 | C-loop | geometric IL_5J7L_018 NA | |
| IL_8BR8_124 | 1/St/360:361, 1/St/371:373 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_8BR8_125 | 1/St/430:439, 1/St/466:468 | No text annotation | ||
| IL_8BR8_185 | 1/St/430:442, 1/St/463:468 | No text annotation | ||
| IL_8BR8_126 | 1/St/439:442, 1/St/463:466 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_8BR8_127 | 1/St/442:448, 1/St/455:463 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8BR8_128 | 1/St/496:502, 1/St/848:849 | No text annotation | homologous IL_4V88_416 NA | |
| IL_8BR8_129 | 1/St/507:511, 1/St/722:726 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_8BR8_130 | 1/St/523:525, 1/St/579:581 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_01003.4 | |
| IL_8BR8_131 | 1/St/525:526, 1/St/576:579 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_8BR8_186 | 1/St/530:532, 1/St/569:572 | Isolated non-canonical cWW pair | geometric IL_1XJR_003 IL_01003.4 | |
| IL_8BR8_187 | 1/St/532:538, 1/St/565:569 | No text annotation | homologous IL_8C3A_433 NA | |
| IL_8BR8_133 | 1/St/539:542, 1/St/552:564 | No text annotation | ||
| IL_8BR8_134 | 1/St/587:588, 1/St/606:608 | No text annotation | ||
| IL_8BR8_188 | 1/St/587:589, 1/St/604:608 | No text annotation | geometric IL_6CK5_011 IL_60572.1 | |
| IL_8BR8_135 | 1/St/588:589, 1/St/604:606 | Stack outside cWW | geometric IL_1NTA_001 IL_77710.1 | |
| IL_8BR8_136 | 1/St/619:620, 1/St/716:719 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_8BR8_137 | 1/St/622:623, 1/St/712:714 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_8BR8_138 | 1/St/626:628, 1/St/707:709 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_01003.4 | |
| IL_8BR8_139 | 1/St/628:632, 1/St/704:707 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_8BR8_140 | 1/St/639:643, 1/St/677:681 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_8BR8_141 | 1/St/646:648, 1/St/672:674 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_01003.4 | |
| IL_8BR8_142 | 1/St/649:653, 1/St/664:671 | Kink-turn | geometric IL_6UFM_001 IL_71972.1 | |
| IL_8BR8_143 | 1/St/739:744, 1/St/768:770 | Other IL | geometric IL_4V88_435 NA | |
| IL_8BR8_144 | 1/St/744:748, 1/St/764:768 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_8BR8_145 | 1/St/749:751, 1/St/761:763 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_01003.4 | |
| IL_8BR8_146 | 1/St/788:790, 1/St/839:845 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8BR8_147 | 1/St/803:805, 1/St/811:813 | Isolated non-canonical cWW pair | geometric IL_4NGF_002 IL_01003.4 | |
| IL_8BR8_148 | 1/St/855:862, 1/St/873:878 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8BR8_149 | 1/St/890:891, 1/St/1318:1320 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_8BR8_150 | 1/St/893:895, 1/St/1315:1316 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_8BR8_151 | 1/St/901:904, 1/St/1305:1309 | C-loop | homologous IL_4V88_443 NA | |
| IL_8BR8_152 | 1/St/917:919, 1/St/1170:1172 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_8BR8_153 | 1/St/922:923, 1/St/1165:1167 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_8BR8_154 | 1/St/956:958, 1/St/1154:1156 | Isolated non-canonical cWW pair | geometric IL_5Y7M_007 IL_01003.4 | |
| IL_8BR8_189 | 1/St/967:975, 1/St/995:1001 | No text annotation | ||
| IL_8BR8_157 | 1/St/1010:1012, 1/St/1146:1147 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_8BR8_158 | 1/St/1014:1018, 1/St/1142:1144 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_8BR8_190 | 1/St/1014:1020, 1/St/1136:1144 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_8BR8_159 | 1/St/1018:1020, 1/St/1136:1142 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_8BR8_160 | 1/St/1022:1023, 1/St/1132:1134 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_8BR8_161 | 1/St/1031:1033, 1/St/1066:1068 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_8BR8_162 | 1/St/1048:1050, 1/St/1059:1060 | Single bulged U | geometric IL_5TBW_131 NA | |
| IL_8BR8_163 | 1/St/1097:1100, 1/St/1113:1119 | No text annotation | geometric IL_4LFB_050 IL_32376.1 | |
| IL_8BR8_164 | 1/St/1186:1192, 1/St/1213:1217 | No text annotation | ||
| IL_8BR8_191 | 1/St/1186:1194, 1/St/1209:1217 | No text annotation | ||
| IL_8BR8_165 | 1/St/1192:1194, 1/St/1209:1213 | No text annotation | ||
| IL_8BR8_166 | 1/St/1196:1198, 1/St/1205:1207 | Isolated non-canonical cWW pair | geometric IL_1U9S_007 IL_01003.4 | |
| IL_8BR8_167 | 1/St/1230:1235, 1/St/1254:1259 | No text annotation | homologous IL_4V88_462 NA | |
| IL_8BR8_168 | 1/St/1236:1238, 1/St/1251:1253 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_8BR8_169 | 1/St/1279:1281, 1/St/1291:1293 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.4 | |
| IL_8BR8_170 | 1/St/1324:1326, 1/St/1419:1422 | No text annotation | geometric IL_4V88_463 NA | |
| IL_8BR8_171 | 1/St/1326:1329, 1/St/1415:1419 | No text annotation | homologous IL_4V88_464 NA | |
| IL_8BR8_172 | 1/St/1330:1332, 1/St/1412:1414 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.4 | |
| IL_8BR8_173 | 1/St/1332:1335, 1/St/1408:1412 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_15225.2 | |
| IL_8BR8_174 | 1/St/1338:1340, 1/St/1403:1405 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_8BR8_175 | 1/St/1341:1344, 1/St/1399:1402 | Double sheared | geometric IL_4V88_468 NA | |
| IL_8BR8_176 | 1/St/1344:1346, 1/St/1398:1399 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_8BR8_177 | 1/St/1353:1355, 1/St/1389:1391 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_8BR8_178 | 1/St/1357:1360, 1/St/1384:1387 | Double sheared | homologous IL_4V88_471 NA | |
| IL_8BR8_179 | 1/St/1362:1364, 1/St/1380:1382 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_01003.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8BR8_180 | No text annotation | ||
| IL_8BR8_010 | No text annotation | ||
| IL_8BR8_035 | No text annotation | ||
| IL_8BR8_132 | No text annotation | ||
| IL_8BR8_155 | No text annotation | ||
| IL_8BR8_156 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8BR8_001 | 1/LD/20:21, 1/Lt/321:328, 1/Lt/353:354 | No text annotation | geometric J3_4WF9_010 J3_68715.1 | |
| J3_8BR8_027 | 1/LD/20:21, 1/Lt/321:332, 1/Lt/341:354 | No text annotation | geometric J3_4V9F_012 J3_24879.1 | |
| J3_8BR8_028 | 1/LD/22:25, 1/Lt/291:308, 1/Lt/315:320 | No text annotation | geometric J3_5J7L_067 NA | |
| J3_8BR8_029 | 1/LD/45:46, 1/LD/59:65, 1/LD/96:100 | No text annotation | geometric J3_5TBW_071 NA | |
| J3_8BR8_030 | 1/LE/9:14, 1/LE/66:67, 1/LE/110:111 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_8BR8_031 | 1/Lt/151:158, 1/Lt/171:181, 1/Lt/193:198 | No text annotation | ||
| J3_8BR8_003 | 1/Lt/531:537, 1/Lt/622:624, 1/Lt/640:643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8BR8_004 | 1/Lt/545:548, 1/Lt/580:584, 1/Lt/609:614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_8BR8_005 | 1/Lt/701:702, 1/Lt/775:777, 1/Lt/805:809 | No text annotation | ||
| J3_8BR8_006 | 1/Lt/1163:1169, 1/Lt/1489:1491, 1/Lt/1503:1506 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8BR8_007 | 1/Lt/1172:1175, 1/Lt/1472:1475, 1/Lt/1484:1486 | No text annotation | ||
| J3_8BR8_008 | 1/Lt/1210:1215, 1/Lt/1264:1268, 1/Lt/1285:1286 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_8BR8_009 | 1/Lt/1222:1226, 1/Lt/1235:1237, 1/Lt/1253:1255 | No text annotation | ||
| J3_8BR8_010 | 1/Lt/1295:1299, 1/Lt/1308:1312, 1/Lt/1452:1457 | No text annotation | ||
| J3_8BR8_032 | 1/Lt/1320:1324, 1/Lt/1434:1435, 1/Lt/1439:1444 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8BR8_011 | 1/Lt/1920:1923, 1/Lt/1998:2002, 1/Lt/2015:2021 | No text annotation | geometric J3_4V9F_007 J3_86017.1 | |
| J3_8BR8_033 | 1/Lt/2075:2077, 1/Lt/2178:2189, 1/Lt/2216:2221 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8BR8_012 | 1/Lt/2088:2090, 1/Lt/2114:2116, 1/Lt/2125:2130 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_8BR8_013 | 1/Lt/2309:2312, 1/Lt/2337:2339, 1/Lt/2353:2358 | No text annotation | ||
| J3_8BR8_014 | 1/Lt/2611:2613, 1/Lt/2627:2630, 1/Lt/2682:2688 | No text annotation | ||
| J3_8BR8_015 | 1/St/40:41, 1/St/346:352, 1/St/377:379 | No text annotation | homologous J3_8P9A_068 J3_58657.1 | |
| J3_8BR8_016 | 1/St/122:126, 1/St/156:160, 1/St/201:203 | No text annotation | ||
| J3_8BR8_017 | 1/St/635:638, 1/St/682:690, 1/St/697:701 | No text annotation | homologous J3_4V88_033 NA | |
| J3_8BR8_018 | 1/St/791:794, 1/St/822:826, 1/St/833:838 | No text annotation | ||
| J3_8BR8_019 | 1/St/905:908, 1/St/1269:1275, 1/St/1297:1304 | No text annotation | homologous J3_4V88_035 NA | |
| J3_8BR8_020 | 1/St/912:915, 1/St/1174:1176, 1/St/1262:1265 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8BR8_021 | 1/St/924:931, 1/St/942:952, 1/St/1160:1164 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8BR8_022 | 1/St/958:963, 1/St/1005:1009, 1/St/1148:1154 | No text annotation | homologous J3_4V88_038 NA | |
| J3_8BR8_023 | 1/St/1025:1030, 1/St/1069:1074, 1/St/1125:1130 | No text annotation | homologous J3_4V88_039 NA | |
| J3_8BR8_024 | 1/St/1035:1036, 1/St/1045:1048, 1/St/1060:1064 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8BR8_025 | 1/St/1077:1080, 1/St/1094:1097, 1/St/1119:1122 | No text annotation | ||
| J3_8BR8_034 | 1/St/1077:1080, 1/St/1094:1100, 1/St/1113:1122 | No text annotation | ||
| J3_8BR8_026 | 1/St/1176:1180, 1/St/1223:1230, 1/St/1259:1262 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_8BR8_001 | 1/Lt/110:111, 1/Lt/221:226, 1/Lt/247:251, 1/Lt/268:271 | No text annotation | ||
| J4_8BR8_002 | 1/Lt/151:158, 1/Lt/171:175, 1/Lt/179:181, 1/Lt/193:198 | No text annotation | ||
| J4_8BR8_003 | 1/Lt/1139:1145, 1/Lt/1159:1162, 1/Lt/1507:1512, 1/Lt/1840:1841 | No text annotation | ||
| J4_8BR8_004 | 1/Lt/1176:1180, 1/Lt/1204:1209, 1/Lt/1287:1288, 1/Lt/1464:1471 | No text annotation | ||
| J4_8BR8_005 | 1/Lt/1179:1180, 1/Lt/1204:1209, 1/Lt/1287:1288, 1/Lt/1464:1470 | No text annotation | ||
| J4_8BR8_006 | 1/Lt/1619:1623, 1/Lt/1635:1639, 1/Lt/1674:1678, 1/Lt/1805:1810 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8BR8_007 | 1/Lt/1680:1682, 1/Lt/1736:1737, 1/Lt/1755:1764, 1/Lt/1798:1803 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8BR8_008 | 1/Lt/2078:2082, 1/Lt/2136:2140, 1/Lt/2164:2166, 1/Lt/2175:2177 | No text annotation | homologous J4_8P9A_019 J4_59590.1 | |
| J4_8BR8_009 | 1/Lt/2427:2430, 1/Lt/2460:2461, 1/Lt/2514:2516, 1/Lt/2550:2553 | No text annotation | ||
| J4_8BR8_010 | 1/St/86:94, 1/St/222:224, 1/St/270:274, 1/St/296:297 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_8BR8_011 | 1/St/502:504, 1/St/729:734, 1/St/775:786, 1/St/847:848 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_8BR8_012 | 1/St/513:521, 1/St/583:586, 1/St/609:619, 1/St/719:720 | No text annotation | ||
| J4_8BR8_013 | 1/St/513:521, 1/St/583:586, 1/St/609:620, 1/St/716:720 | No text annotation | ||
| J5_8BR8_001 | 1/LD/36:43, 1/LD/102:107, 1/LD/113:114, 1/LD/121:123, 1/Lt/19:21 | No text annotation | ||
| J5_8BR8_002 | 1/Lt/406:411, 1/Lt/516:519, 1/Lt/658:661, 1/Lt/1062:1063, 1/Lt/1119:1125 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8BR8_003 | 1/Lt/423:426, 1/Lt/446:450, 1/Lt/457:462, 1/Lt/469:470, 1/Lt/500:504 | No text annotation | ||
| J5_8BR8_004 | 1/Lt/1538:1546, 1/Lt/1570:1571, 1/Lt/1598:1599, 1/Lt/1603:1611, 1/Lt/1819:1821 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8BR8_005 | 1/Lt/1887:1894, 1/Lt/2238:2246, 1/Lt/2290:2299, 1/Lt/2373:2379, 1/Lt/2397:2402 | No text annotation | ||
| J5_8BR8_006 | 1/Lt/1904:1907, 1/Lt/2035:2038, 1/Lt/2051:2052, 1/Lt/2074:2075, 1/Lt/2221:2227 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_8BR8_007 | 1/St/30:33, 1/St/387:391, 1/St/394:400, 1/St/420:426, 1/St/472:475 | No text annotation | ||
| J5_8BR8_008 | 1/St/53:56, 1/St/77:84, 1/St/299:301, 1/St/322:324, 1/St/335:339 | No text annotation | homologous J5_8C3A_020 NA | |
| J6_8BR8_001 | 1/LD/34:36, 1/Lt/21:26, 1/Lt/57:67, 1/Lt/74:78, 1/Lt/104:108, 1/Lt/273:280 | No text annotation | ||
| J6_8BR8_002 | 1/Lt/1904:1907, 1/Lt/2035:2038, 1/Lt/2051:2052, 1/Lt/2074:2077, 1/Lt/2178:2189, 1/Lt/2216:2227 | No text annotation | ||
| J7_8BR8_001 | 1/Lt/666:671, 1/Lt/684:685, 1/Lt/824:827, 1/Lt/851:856, 1/Lt/867:871, 1/Lt/1038:1039, 1/Lt/1052:1057 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8BR8_002 | No text annotation |
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