HL_8BR8_008

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_008 not in the Motif Atlas

Homologous match to HL_8C3A_003

Geometric discrepancy: 0.0998

The information below is about HL_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8BR8|1|Lt|C|88
8BR8|1|Lt|G|89
8BR8|1|Lt|G|90
8BR8|1|Lt|C|91
8BR8|1|Lt|G|92
8BR8|1|Lt|A|93
8BR8|1|Lt|G|94

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LM

60S ribosomal protein L13

Chain LR

Ribosomal protein L18

Chain Lb

Ribosomal protein L27a

Chain Lp

Ribosomal protein L44

Chain Lu

Transfer RNA; tRNA