HL_8BR8_010

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCCGAGGG

Length

8 nucleotides

Bulged bases

8BR8|1|Lt|G|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_010 not in the Motif Atlas

Geometric match to HL_3K0J_002

Geometric discrepancy: 0.3843

The information below is about HL_3K0J_002

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8BR8|1|Lt|C|161
8BR8|1|Lt|C|162
8BR8|1|Lt|C|163
8BR8|1|Lt|G|164
8BR8|1|Lt|A|165
8BR8|1|Lt|G|166
8BR8|1|Lt|G|167
8BR8|1|Lt|G|168

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LZ

Ribosomal protein L26

Chain Lf

Ribosomal protein L32