HL_8BR8_014

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGCGCGGCCC

Length

10 nucleotides

Bulged bases

8BR8|1|Lt|G|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_014 not in the Motif Atlas

Homologous match to HL_5TBW_009

Geometric discrepancy: 0.1225

The information below is about HL_5TBW_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8BR8|1|Lt|G|255
8BR8|1|Lt|G|256
8BR8|1|Lt|C|257
8BR8|1|Lt|G|258
8BR8|1|Lt|C|259
8BR8|1|Lt|G|260
8BR8|1|Lt|G|261
8BR8|1|Lt|C|262
8BR8|1|Lt|C|263
8BR8|1|Lt|C|264

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LO

Ribosomal protein L15

Chain Lb

Ribosomal protein L27a

Chain Lj

Ribosomal protein L36-1

Chain Lp

Ribosomal protein L44