HL_8BR8_015

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_015 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1152

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BR8|1|Lt|C|309
8BR8|1|Lt|G|310
8BR8|1|Lt|C|311
8BR8|1|Lt|G|312
8BR8|1|Lt|A|313
8BR8|1|Lt|G|314

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LG

Ribosomal protein L39

Chain Lk

Ribosomal protein L37