HL_8BR8_017

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCCG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_017 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1531

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8BR8|1|Lt|C|375
8BR8|1|Lt|C|376
8BR8|1|Lt|C|377
8BR8|1|Lt|G|378

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LP

Ribosomal protein L13a

Chain Lf

Ribosomal protein L32

Chain Lg

Ribosomal protein L35a