HL_8BR8_021

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCCCCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_021 not in the Motif Atlas

Geometric match to HL_4LFB_002

Geometric discrepancy: 0.3406

The information below is about HL_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8BR8|1|Lt|C|462
8BR8|1|Lt|G|463
8BR8|1|Lt|C|464
8BR8|1|Lt|C|465
8BR8|1|Lt|C|466
8BR8|1|Lt|C|467
8BR8|1|Lt|G|468
8BR8|1|Lt|G|469

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LR

Ribosomal protein L18

Chain Lc

60S ribosomal protein L29