HL_8BR8_023
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BR8_023 not in the Motif Atlas
- Homologous match to HL_5TBW_019
- Geometric discrepancy: 0.1325
- The information below is about HL_5TBW_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8BR8|1|Lt|C|561
8BR8|1|Lt|G|562
8BR8|1|Lt|A|563
8BR8|1|Lt|A|564
8BR8|1|Lt|A|565
8BR8|1|Lt|G|566
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain Lq
- Ribosomal protein L37a
- Chain SM
- Ribosomal protein S11
- Chain SP
- Ribosomal protein S13
- Chain St
- Small subunit ribosomal RNA; SSU rRNA
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