HL_8BR8_027

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGGCCUGCCC

Length

10 nucleotides

Bulged bases

8BR8|1|Lt|C|742

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_027 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1974

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BR8|1|Lt|G|735
8BR8|1|Lt|G|736
8BR8|1|Lt|G|737
8BR8|1|Lt|C|738
8BR8|1|Lt|C|739
8BR8|1|Lt|U|740
8BR8|1|Lt|G|741
8BR8|1|Lt|C|742
8BR8|1|Lt|C|743
8BR8|1|Lt|C|744

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain SR

Ribosomal protein S15

Chain SV

Ribosomal protein S18