HL_8BR8_033

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_033 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.0973

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BR8|1|Lt|C|1091
8BR8|1|Lt|G|1092
8BR8|1|Lt|C|1093
8BR8|1|Lt|A|1094
8BR8|1|Lt|G|1095
8BR8|1|Lt|G|1096

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lf

Ribosomal protein L32