HL_8BR8_036

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_036 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.2866

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BR8|1|Lt|U|1228
8BR8|1|Lt|G|1229
8BR8|1|Lt|A|1230
8BR8|1|Lt|A|1231
8BR8|1|Lt|G|1232
8BR8|1|Lt|A|1233

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LO

Ribosomal protein L15

Chain Lk

Ribosomal protein L37