HL_8BR8_037

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGGCGCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_037 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3611

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8BR8|1|Lt|G|1242
8BR8|1|Lt|G|1243
8BR8|1|Lt|G|1244
8BR8|1|Lt|C|1245
8BR8|1|Lt|G|1248
8BR8|1|Lt|C|1249
8BR8|1|Lt|C|1250
8BR8|1|Lt|C|1251

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LD

5.8S rRNA

Chain LY

Ribosomal protein L23A