HL_8BR8_038
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GCGGAGACUC
- Length
- 10 nucleotides
- Bulged bases
- 8BR8|1|Lt|C|1279, 8BR8|1|Lt|U|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BR8_038 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.2149
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8BR8|1|Lt|G|1272
8BR8|1|Lt|C|1273
8BR8|1|Lt|G|1274
8BR8|1|Lt|G|1275
8BR8|1|Lt|A|1276
8BR8|1|Lt|G|1277
8BR8|1|Lt|A|1278
8BR8|1|Lt|C|1279
8BR8|1|Lt|U|1280
8BR8|1|Lt|C|1281
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LG
- Ribosomal protein L39
- Chain LS
- Ribosomal protein L19
- Chain LY
- Ribosomal protein L23A
- Chain Lh
- Ribosomal protein L34
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