HL_8BR8_040

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGGCGCCCCGG

Length

11 nucleotides

Bulged bases

8BR8|1|Lt|C|1353, 8BR8|1|Lt|G|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_040 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1046

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8BR8|1|Lt|C|1345
8BR8|1|Lt|G|1346
8BR8|1|Lt|G|1347
8BR8|1|Lt|C|1348
8BR8|1|Lt|G|1349
8BR8|1|Lt|C|1350
8BR8|1|Lt|C|1351
8BR8|1|Lt|C|1352
8BR8|1|Lt|C|1353
8BR8|1|Lt|G|1354
8BR8|1|Lt|G|1355

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain LV

Ribosomal L22e