HL_8BR8_044

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UCAGCAG

Length

7 nucleotides

Bulged bases

8BR8|1|Lt|C|1498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_044 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.0988

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BR8|1|Lt|U|1494
8BR8|1|Lt|C|1495
8BR8|1|Lt|A|1496
8BR8|1|Lt|G|1497
8BR8|1|Lt|C|1498
8BR8|1|Lt|A|1499
8BR8|1|Lt|G|1500

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19