HL_8BR8_047

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGAAC

Length

5 nucleotides

Bulged bases

8BR8|1|Lt|G|1600, 8BR8|1|Lt|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_047 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2996

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BR8|1|Lt|G|1599
8BR8|1|Lt|G|1600
8BR8|1|Lt|A|1601
8BR8|1|Lt|A|1602
8BR8|1|Lt|C|1603

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain LX

Ribosomal protein L24

Chain St

Small subunit ribosomal RNA; SSU rRNA