HL_8BR8_050

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_050 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.12

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BR8|1|Lt|A|1708
8BR8|1|Lt|G|1709
8BR8|1|Lt|C|1710
8BR8|1|Lt|G|1711
8BR8|1|Lt|A|1712
8BR8|1|Lt|U|1713

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lj

Ribosomal protein L36-1

Chain Ln

Ribosomal protein L10a

Chain Lp

Ribosomal protein L44