HL_8BR8_053

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8BR8|1|Lt|A|1860, 8BR8|1|Lt|A|1861, 8BR8|1|Lt|C|1862

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_053 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1498

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8BR8|1|Lt|G|1857
8BR8|1|Lt|G|1858
8BR8|1|Lt|G|1859
8BR8|1|Lt|A|1860
8BR8|1|Lt|A|1861
8BR8|1|Lt|C|1862
8BR8|1|Lt|G|1863
8BR8|1|Lt|G|1864
8BR8|1|Lt|G|1865
8BR8|1|Lt|C|1866

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain Lf

Ribosomal protein L32