HL_8BR8_055

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGUCGCGC

Length

8 nucleotides

Bulged bases

8BR8|1|Lt|C|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_055 not in the Motif Atlas

Geometric match to HL_3AKZ_010

Geometric discrepancy: 0.3637

The information below is about HL_3AKZ_010

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8BR8|1|Lt|G|2005
8BR8|1|Lt|G|2006
8BR8|1|Lt|U|2007
8BR8|1|Lt|C|2008
8BR8|1|Lt|G|2009
8BR8|1|Lt|C|2010
8BR8|1|Lt|G|2011
8BR8|1|Lt|C|2012

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LI

60S ribosomal protein L7a

Chain LY

Ribosomal protein L23A