HL_8BR8_056

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8BR8|1|Lt|G|2042

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_056 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1744

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8BR8|1|Lt|C|2040
8BR8|1|Lt|U|2041
8BR8|1|Lt|G|2042
8BR8|1|Lt|G|2043
8BR8|1|Lt|G|2044
8BR8|1|Lt|G|2045
8BR8|1|Lt|C|2046
8BR8|1|Lt|G|2047
8BR8|1|Lt|G|2048

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lc

60S ribosomal protein L29