HL_8BR8_059

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_059 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.159

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8BR8|1|Lt|C|2117
8BR8|1|Lt|A|2118
8BR8|1|Lt|G|2119
8BR8|1|Lt|A|2120
8BR8|1|Lt|A|2121
8BR8|1|Lt|G|2122
8BR8|1|Lt|G|2123
8BR8|1|Lt|G|2124

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LU

Ribosomal protein L21

Chain Lp

Ribosomal protein L44