HL_8BR8_069

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUGACCGCCUCUAAG

Length

15 nucleotides

Bulged bases

8BR8|1|Lt|G|2532, 8BR8|1|Lt|C|2536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1305

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BR8|1|Lt|C|2526
8BR8|1|Lt|U|2527
8BR8|1|Lt|G|2528
8BR8|1|Lt|A|2529
8BR8|1|Lt|C|2530
8BR8|1|Lt|C|2531
8BR8|1|Lt|G|2532
8BR8|1|Lt|C|2533
8BR8|1|Lt|C|2534
8BR8|1|Lt|U|2535
8BR8|1|Lt|C|2536
8BR8|1|Lt|U|2537
8BR8|1|Lt|A|2538
8BR8|1|Lt|A|2539
8BR8|1|Lt|G|2540

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LJ

Ribosomal protein L6

Chain LP

Ribosomal protein L13a

Chain Ls

Ubiquitin/Ribosomal protein L40e