HL_8BR8_070

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCGCCCCAGCCCCGUGCCCCGUCGCCGAG

Length

30 nucleotides

Bulged bases

8BR8|1|Lt|G|2573, 8BR8|1|Lt|C|2574, 8BR8|1|Lt|A|2580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|Lt|C|2572
8BR8|1|Lt|G|2573
8BR8|1|Lt|C|2574
8BR8|1|Lt|G|2575
8BR8|1|Lt|C|2576
8BR8|1|Lt|C|2577
8BR8|1|Lt|C|2578
8BR8|1|Lt|C|2579
8BR8|1|Lt|A|2580
8BR8|1|Lt|G|2581
8BR8|1|Lt|C|2582
8BR8|1|Lt|C|2583
8BR8|1|Lt|C|2584
8BR8|1|Lt|C|2585
8BR8|1|Lt|G|2586
8BR8|1|Lt|U|2587
8BR8|1|Lt|G|2588
8BR8|1|Lt|C|2589
8BR8|1|Lt|C|2590
8BR8|1|Lt|C|2591
8BR8|1|Lt|C|2592
8BR8|1|Lt|G|2593
8BR8|1|Lt|U|2594
8BR8|1|Lt|C|2595
8BR8|1|Lt|G|2596
8BR8|1|Lt|C|2597
8BR8|1|Lt|C|2598
8BR8|1|Lt|G|2599
8BR8|1|Lt|A|2600
8BR8|1|Lt|G|2601

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LJ

Ribosomal protein L6

Chain LN

Ribosomal protein L14

Chain LP

Ribosomal protein L13a

Chain LT

60S ribosomal protein L18a

Chain Lg

Ribosomal protein L35a