HL_8BR8_071

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGAGACCAC

Length

9 nucleotides

Bulged bases

8BR8|1|Lt|G|2617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_071 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1954

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8BR8|1|Lt|G|2616
8BR8|1|Lt|G|2617
8BR8|1|Lt|A|2618
8BR8|1|Lt|G|2619
8BR8|1|Lt|A|2620
8BR8|1|Lt|C|2621
8BR8|1|Lt|C|2622
8BR8|1|Lt|A|2623
8BR8|1|Lt|C|2624

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LQ

Ribosomal protein L17

Chain Le

Ribosomal protein L31B