HL_8BR8_073

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

8BR8|1|Lu|C|16, 8BR8|1|Lu|G|17, 8BR8|1|Lu|G|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_073 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.1865

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|Lu|C|13
8BR8|1|Lu|A|14
8BR8|1|Lu|G|15
8BR8|1|Lu|C|16
8BR8|1|Lu|G|17
8BR8|1|Lu|G|18
8BR8|1|Lu|A|19
8BR8|1|Lu|A|20
8BR8|1|Lu|G|21

Current chains

Chain Lu

E-site tRNA

Nearby chains

Chain Lt

Large subunit ribosomal RNA; LSU rRNA