HL_8BR8_074

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_074 not in the Motif Atlas

Homologous match to HL_1QTQ_003

Geometric discrepancy: 0.2128

The information below is about HL_1QTQ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8BR8|1|Lu|G|52
8BR8|1|Lu|A|53
8BR8|1|Lu|U|54
8BR8|1|Lu|C|55
8BR8|1|Lu|G|56
8BR8|1|Lu|A|57
8BR8|1|Lu|A|58
8BR8|1|Lu|A|59
8BR8|1|Lu|C|60

Current chains

Chain Lu

E-site tRNA

Nearby chains

Chain Ln

Ribosomal protein L10a

Chain Lp

Ribosomal protein L44

Chain Lt

Large subunit ribosomal RNA; LSU rRNA