HL_8BR8_078

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGCGAGC

Length

7 nucleotides

Bulged bases

8BR8|1|St|G|187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_078 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1711

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BR8|1|St|G|182
8BR8|1|St|G|183
8BR8|1|St|C|184
8BR8|1|St|G|185
8BR8|1|St|A|186
8BR8|1|St|G|187
8BR8|1|St|C|188

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SM

Ribosomal protein S11