HL_8BR8_087

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCUCCAGG

Length

9 nucleotides

Bulged bases

8BR8|1|St|G|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_087 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1635

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8BR8|1|St|C|543
8BR8|1|St|G|544
8BR8|1|St|C|545
8BR8|1|St|U|546
8BR8|1|St|C|547
8BR8|1|St|C|548
8BR8|1|St|A|549
8BR8|1|St|G|550
8BR8|1|St|G|551

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SK

Ribosomal protein S9

Chain Sb

Ribosomal protein S24