HL_8BR8_088

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCGGCGCGCCG

Length

12 nucleotides

Bulged bases

8BR8|1|St|G|595, 8BR8|1|St|C|596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|St|C|591
8BR8|1|St|G|592
8BR8|1|St|C|593
8BR8|1|St|G|594
8BR8|1|St|G|595
8BR8|1|St|C|596
8BR8|1|St|G|597
8BR8|1|St|C|598
8BR8|1|St|G|599
8BR8|1|St|C|600
8BR8|1|St|C|601
8BR8|1|St|G|602

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain SH

40S ribosomal protein S7

Chain SM

Ribosomal protein S11