HL_8BR8_089

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGGGUGAAACAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|St|C|653
8BR8|1|St|G|654
8BR8|1|St|G|655
8BR8|1|St|G|656
8BR8|1|St|U|657
8BR8|1|St|G|658
8BR8|1|St|A|659
8BR8|1|St|A|660
8BR8|1|St|A|661
8BR8|1|St|C|662
8BR8|1|St|A|663
8BR8|1|St|G|664

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain Lu

Transfer RNA; tRNA

Chain SF

Ribosomal protein S5

Chain SQ

Ribosomal protein S14

Chain Sd

40S ribosomal protein S26