HL_8BR8_090

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_090 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0952

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BR8|1|St|C|691
8BR8|1|St|G|692
8BR8|1|St|C|693
8BR8|1|St|A|694
8BR8|1|St|G|695
8BR8|1|St|G|696

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SP

Ribosomal protein S13

Chain Sd

40S ribosomal protein S26