HL_8BRM_012

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

8BRM|1|Lt|G|177, 8BRM|1|Lt|A|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_012 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.2536

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BRM|1|Lt|C|175
8BRM|1|Lt|C|176
8BRM|1|Lt|G|177
8BRM|1|Lt|A|178
8BRM|1|Lt|G|179

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LZ

Ribosomal protein L26