HL_8BRM_013
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GUGCAAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8BRM|1|Lt|G|185, 8BRM|1|Lt|C|186, 8BRM|1|Lt|A|187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BRM_013 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.0907
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8BRM|1|Lt|G|183
8BRM|1|Lt|U|184
8BRM|1|Lt|G|185
8BRM|1|Lt|C|186
8BRM|1|Lt|A|187
8BRM|1|Lt|A|188
8BRM|1|Lt|G|189
8BRM|1|Lt|C|190
8BRM|1|Lt|C|191
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LD
- 5.8S rRNA
- Chain LZ
- Ribosomal protein L26
- Chain Lf
- Ribosomal protein L32
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