HL_8BRM_019
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UCUCGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 8BRM|1|Lt|C|396
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BRM_019 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.1154
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8BRM|1|Lt|U|388
8BRM|1|Lt|C|389
8BRM|1|Lt|U|390
8BRM|1|Lt|C|391
8BRM|1|Lt|G|392
8BRM|1|Lt|A|393
8BRM|1|Lt|A|394
8BRM|1|Lt|A|395
8BRM|1|Lt|C|396
8BRM|1|Lt|A|397
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LB
- Ribosomal protein L3
- Chain Lb
- Ribosomal protein L27a
- Chain Lf
- Ribosomal protein L32
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