HL_8BRM_022

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGCCCCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_022 not in the Motif Atlas

Geometric match to HL_4LFB_002

Geometric discrepancy: 0.3633

The information below is about HL_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BRM|1|Lt|C|462
8BRM|1|Lt|G|463
8BRM|1|Lt|C|464
8BRM|1|Lt|C|465
8BRM|1|Lt|C|466
8BRM|1|Lt|C|467
8BRM|1|Lt|G|468
8BRM|1|Lt|G|469

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LR

Ribosomal protein L18

Chain Lc

Ribosomal protein L29