HL_8BRM_027

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UCCCAG

Length

6 nucleotides

Bulged bases

8BRM|1|Lt|C|676, 8BRM|1|Lt|A|679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_027 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.2755

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BRM|1|Lt|U|675
8BRM|1|Lt|C|676
8BRM|1|Lt|C|677
8BRM|1|Lt|C|678
8BRM|1|Lt|A|679
8BRM|1|Lt|G|680

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lb

Ribosomal protein L27a

Chain Lc

Ribosomal protein L29

Chain Lp

Ribosomal protein L44