HL_8BRM_030

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGGUAAGCA

Length

9 nucleotides

Bulged bases

8BRM|1|Lt|G|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_030 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2914

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BRM|1|Lt|U|835
8BRM|1|Lt|G|836
8BRM|1|Lt|G|837
8BRM|1|Lt|U|838
8BRM|1|Lt|A|839
8BRM|1|Lt|A|840
8BRM|1|Lt|G|841
8BRM|1|Lt|C|842
8BRM|1|Lt|A|843

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LK

Ribosomal protein L10