HL_8BRM_033

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCGCGC

Length

6 nucleotides

Bulged bases

8BRM|1|Lt|G|1045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_033 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1358

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

8BRM|1|Lt|G|1043
8BRM|1|Lt|C|1044
8BRM|1|Lt|G|1045
8BRM|1|Lt|C|1046
8BRM|1|Lt|G|1047
8BRM|1|Lt|C|1048

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LH

Ribosomal protein L7

Chain LR

Ribosomal protein L18