HL_8BRM_035

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCGCCCC

Length

7 nucleotides

Bulged bases

8BRM|1|Lt|C|1153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_035 not in the Motif Atlas

Geometric match to HL_7RQB_004

Geometric discrepancy: 0.3862

The information below is about HL_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79921.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

15

Unit IDs

8BRM|1|Lt|G|1149
8BRM|1|Lt|C|1150
8BRM|1|Lt|G|1151
8BRM|1|Lt|C|1152
8BRM|1|Lt|C|1153
8BRM|1|Lt|C|1154
8BRM|1|Lt|C|1155

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain Le

Ribosomal protein L31B