HL_8BRM_046

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8BRM|1|Lt|U|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_046 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1178

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

8BRM|1|Lt|C|1555
8BRM|1|Lt|C|1556
8BRM|1|Lt|U|1557
8BRM|1|Lt|C|1558
8BRM|1|Lt|G|1559
8BRM|1|Lt|G|1560

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lo

Ribosomal protein L41

Chain Lq

Ribosomal protein L37a

Chain St

Small subunit ribosomal RNA; SSU rRNA